CODEX with Seurat: A high-dimensional approach to unlocking spatial insights
Webinar | August 31, 2021 | 8 AM PDT, 11 AM EDT, 5 PM CEST
Observing cell-cell interactions is critical to understanding causative factors of biological outcomes. As the only benchtop platform capable of multiplexing >40 markers in tissue, CODEX uniquely enables these observations by assaying tissue biopsies using fluidics, an inverted microscope, oligo-conjugated antibodies, and fluorescent reporters. In this webinar, we will demonstrate CODEX single-cell spatial phenotyping using Seurat- one of the most widely used open-source platforms for single-cell RNA analysis. In addition, we will cover how to perform cellular neighborhood analysis adapted from Garry Nolan’s lab.
What you will learn
How CODEX enables tissue multiplexing of 60 markers with single-cell resolution.
How to read and analyze CODEX data with Seurat.
How to visualize cell neighborhoods with CODEX MAV.
Grady Carlson, PhD
Bioinformatics Field Application Scientist