We’ve rebranded some of our products, learn more ›
CODEX is now PhenoCycler
Phenoptics is now Phenolmager
Software Support
Learn about available software updates for PhenoCycler and PhenoImager
PhenoCycler Software Updates
The PhenoCycler™ software suite is intended to provide a comprehensive solution to the users needs, managing everything from data acquisition to image analysis and interpretation of imaging data.
Multiplex Analysis Viewer (MAV)
The Multiple Analysis Viewer is a tool that allows the visualization and analysis of PhenoCycler images, segmented cells and their sub-populations (or phenotypes). It also allows performing gating and clustering of single cells through X-shift, a population finding algorithm for single-cell multidimensional data.
MAV Instructions
PhenoImager Software Updates
inForm® Tissue Analysis Software
inForm 2.6 is an update for inForm 2.1 and later; it can be installed and run without an updated license. Customers with version 2.0 or earlier must upgrade their license in order to run inForm 2.6. Please contact your Akoya Sales Representative for purchasing details.
To install:
1. Download and unzip R installation (version R 3.1.0)
2. Double click on install_R_and_packages.bat
Please Note: R 3.1.0 only needs to be installed the first time inForm is installed on a computer
3. Download and install inForm Setup
inForm 2.6* Setup Files
Download Now
R-installation Package (first time installation only)
Download Now
User Guides
inForm 2.6 User Manual (PDF)
Release Notes
inForm 2.6 Release Notes (PDF)
inForm 2.6 What’s New (PDF)
Note: inForm 2.6 is released in support of Mantra, Vectra 3, and PhenoImager Fusion and PhenoImager HT (formerly Vectra Polaris). It does not support Vectra 2. Current Vectra 2 customers should remain on inForm 2.1.
*Windows 10, 64-bit platforms only.
phenoptrReports & phenoptr
To use phenoptrReports, please install both phenoptr and phenoptrReports:
- phenoptr provides functions that consolidate and analyze output tables created by Akoya Bioscience’s inForm® software.
- phenoptrReports generates shareable reports and visualizations based on phenoptr output. An easy-to-use, front-end GUI is provided to run phenoptr, removing the need to know R scripting to run phenopr functions.
Setup Files
RStudio
Install R
Rtools (Win)
Xcode (OS)
User Guides
Installation Instructions
phenoptrReports Tutorials
Release Notes
0.2.10 phenoptrReports Changelog
0.2.9 phenoptr Changelog
Note: Both the phenoptr and phenoptrReports packages are updated frequently based on user feedback. Please register for updates to be notified as new versions are released.
Phenochart Whole Slide Viewer
Phenochart is a whole slide viewer for slides scanned with PhenoImager Fusion and PhenoImager HT (formerly Vectra Polaris) and Vectra 3. It is free to download
Phenochart 1.1.0 Setup Files
Download Now
User Guides
Phenochart 1.1.0 User Manual (PDF)
Release Notes
Phenochart 1.1.0 Release Notes (PDF)
Mantra 2
Please contact your Akoya Sales Representative for information about upgrading to Mantra 1.0.5.
User Guides
Mantra Snap User Manual
Release Notes
Release Notes (PDF)
What’s New (PDF)
*Windows 10, 64-bit platforms only.
Vectra 3
The Vectra 3 instrument has been discontinued. Please contact your Akoya Sales Representative for information about upgrading to Vectra 3.0.7.
User Guides
Vectra User Manual
Release Notes
Release Notes (PDF)
What’s New (PDF)
*Windows 10, 64-bit platforms only.
PhenoImager™ HT (formerly Vectra Polaris)
Please contact your Akoya Sales Representative for information about upgrading to PhenoImager 1.0.13 (formerly Vectra Polaris 1.0.13).
User Guides
PhenoImager HT User Manual
Release Notes
Release Notes (PDF)
What’s New (PDF)
*Windows 10, 64-bit platforms only.
